species:   Rhsol
pid:       PID0558
parent:    Rhi-milR-70
paralog:   
locus:     KB317727.1:129658-129736
matures:   ['GAUGAUCUUAAGGCUGCAUACGA', 'GUAUGCAUGCUUCAAAUCGUCCUG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317727.1:129658-129736

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

        *****************************      ****************************        
UGUCGAAGGAACGUAUGCAUGCUUCAAAUCGUCCUGUACCACCCCAGAUGAUCUUAAGGCUGCAUACGACAUGUCAUCA
((..((.....((((((((.((((.((((((((.((........)))))))).)).)))))))))))).....))..))
----------------------------------------------GAUGAUCUUAAGGCUGCAUACGA---------- l=23 a=0 c
------------GUAUGCAUGCUUCAAAUCGUCCUG------------------------------------------- l=24 a=0 c*
---------------------------------------------AGAUGAUCUUAAGGCUGCAUACGACA-------- l=26 a=1 ma
----------ACGUAUGCAUGCUUCAAAUCGUCCUGU------------------------------------------ l=27 a=0 ma*

----------------------------------------------GAUGAUCUUAAGGCUGCAUA------------- l=20 a=1 
---------------------------------------------AGAUGAUCUUAAGGCUGCAUACGACA-------- l=26 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100011101100
fn-011
